Scientists found an even closer match between the new coronavirus and a virus in bats — more evidence that it jumped naturally, like other viruses

Benjamin P. Y H. Lee/BMC Ecology Image CompetitionA researcher with a bat.

When Chinese authorities first reported an outbreak of a new coronavirus, many disease scientists had the same thought: History was repeating itself.

The COVID-19 pandemic is the latest example of a well established phenomenon – viruses commonly jump from an animal host to humans. This type of cross-species hop, called a spillover event, also led to the outbreaks of Ebola and severe acute respiratory syndrome (SARS). Both of those viruses originated in bats, and genetic research has all but confirmed the same for the new coronavirus.

A study published in February found that the new virus, whose scientific name is SARS-CoV-2, shares 96% of its genetic code with a coronavirus called RaTG13 that circulates in Chinese bats. This week, researchers found an even closer match: A study in the journal Current Biology describes a previously unknown coronavirus named RmYN02 that’s 97.1% similar to SARS-CoV-2. It was found in the bats in China’s Yunnan province between May and October 2019.

Despite these close matches, however, neither of these viruses are the new coronavirus’ direct ancestor. Lingering questions about exactly where and when the outbreak started have given rise to a range of unsubstantiated theories.

“Since the discovery of SARS-CoV-2 there have been a number of unfounded suggestions that the virus has a laboratory origin,” Weifeng Shi, the lead author of the recent study, said in a press release. He added that the discovery of RmYN02 provides “strong evidence against SARS-CoV-2 being a laboratory escape.”

Although it’s not impossible for a stored sample of a bat coronavirus to leak from a lab, it’s far more likely that this one jumped naturally from bats to an intermediary species before making its way into our population.

Infectious-disease researchers had been warning of the potential for exactly such a spillover event for years.

Many spillovers have occurred in the past

Bird FluREUTERS/StringerTechnicians wearing protection suits begin to cull poultry at a poultry wholesale market, where H7N9 bird flu virus was detected in pigeon samples, in Shanghai, April 5, 2013.

Experts have long agreed that the next pandemic was always a matter of when, not if.

“The world needs to prepare for pandemics in the same serious way it prepares for war,” Bill Gates said during a 2018 conference. “If history has taught us anything, it’s that there will be another deadly global pandemic.”

The year prior, Anthony Fauci, director of the National Institute of Allergy and Infectious Diseases, warned of the inevitability of a “surprise outbreak” of a new disease.

“There is no question that there will be a challenge to the coming administration in the arena of infectious diseases,” Fauci said during a 2017 speech at Georgetown University, specifically highlighting the threat of unknown diseases.

“The thing we’re extraordinarily confident about is that we’re going to see this in the next few years,” he added.

Anthony FauciAlex Wong/Getty ImagesAnthony Fauci, director of the National Institute of Allergy and Infectious Diseases, listens to the White House coronavirus task force’s daily briefing on April 17, 2020 in Washington, DC.

Three out of every four emerging infectious diseases come to us from other species; these pathogens are known as zoonotic diseases.

The 2009-2010 H1N1 pandemic – swine flu – started in pigs then killed nearly 300,000 people. People have caught bird flus via direct contact with infected poultry. Other pandemic influenza strains, including the 1957 “Asian flu” and the 1968 Hong Kong pandemic, likely started in birds, too.

And in the last 45 years, at least four epidemics – including SARS – have been traced back to bats.

“Bats and birds are considered reservoir species for viruses with pandemic potential,” Bart Haagmans, a virologist at the Erasmus Medical Centre in Rotterdam, Netherlands, previously told Business Insider.

Researchers traced the SARS coronavirus to a population of horseshoe bats in China’s Yunnan province; humans caught it from civet cats at a wet market in Guangdong. The virus killed 774 people and infected more than 8,000 in eight months.

Middle East respiratory syndrome (MERS), also a coronavirus, first passed from bats to dromedary camels. It circulated in the camel population undetected for decades before jumping to humans in 2012. So far, 858 people have died across 28 countries from the illness, which is marked by a fever, cough, and shortness of breath.

In Southeast Asia, fruit bats were the original hosts of the deadly Nipah virus, which emerged in Malaysia in 1998, then again in India in 2001. The bats passed it to farmed pigs, which gave it to people. Patients experienced headaches and vomiting; many slipped into a coma and died.

Fruit bats in Africa have played a major role in Ebola outbreaks as well. The worst Ebola outbreak in history, however, came from a population of long-fingered bats. More than 11,000 people died in that epidemic from 2013 to 2016.

Bats are prolific virus carriers

Horseshoe batDe Agostini/GettyA greater horseshoe bat, a relative of the Rhinolophis sinicus bat species from China that was the original host of the SARS virus.

Scientists estimate that there are 1,400 living bat species.

“The great diversity of bats also means they host a great diversity of viruses,” Nancy Simmons, curator of the American Museum of Natural History’s mammology department, said during a media briefing on April 22.

Bats harbour a significantly higher proportion of viruses than other mammals, according to a 2017 study. In fact, a 2019 study found that bats carry more than 200 coronaviruses. They’re ideal hosts if you’re a virus because bats fly across large geographical ranges, transporting diseases as they go without getting sick themselves.

Bats pass these virus to other species via their poop or saliva, and the unwitting intermediaries can transmit the virus to humans in the same way.

A study published in March 2019 predicted that bats would be the source of a new coronavirus outbreak in China.

“It is highly likely that future SARS- or MERS-like coronavirus outbreaks will originate from bats, and there is an increased probability that this will occur in China,” the researchers wrote at the time.

That’s because the majority of coronaviruses – those that affect humans and animals – can be found in China, and many bats “live near humans in China, potentially transmitting viruses to humans and livestock,” the authors said.

Millions of people are exposed to zoonotic viruses annually

Peter Daszak, president of EcoHealth Alliance, told NPR in April that his colleagues are “finding 1 to 7 million people exposed” to zoonotic viruses in Southeast Asia each year.

“That’s the pathway. It’s just so obvious to all of us working in the field,” he said.

Civet round-up SARSDustin Shum/South China Morning Post via GettyGuangzhou government officers seize civet cats in Xinyuan wildlife market in Guangzhou to prevent the spread of the SARS disease, January 5, 2004.

Dennis Carroll, former director of US AID’s emerging threats division, told Nautilus Magazine in March that research from EcoHealth Alliance suggests “we’re looking at an elevation of spillover events two to three times more than what we saw 40 years earlier.”

That’s because of the growing human population and the way we’re encroaching on wild areas.

“The single biggest predictor of spillover events is land-use change – more land going to agriculture and more specifically to livestock production,” Carroll said.

He added, “whatever future threats we’re going to face already exist; they are currently circulating in wildlife.”

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